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EPISEQ® SARS-COV-2

for SARS-CoV-2 variant identification starting from NGS data

01       |       02       |       03

UPLOAD

ANALYZE

REPORT

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FAST AND INTUITIVE WORKFLOW

01         UPLOAD

From your personal account you can directly upload your:

  • Illumina® (paired-end or single-end),

  • Thermo Fisher Ion Torrent® or

  • Oxford Nanopore Technologies® FASTQ files.

Use of targeted amplicon-based or targeted capture-based approaches are recommended.

Compatible primer sets:  

  • ARTIC v3  

  • ARTIC v4  

  • ARTIC v4.1 

  • VarSkip Short (VSS)  

  • Midnight (v1200) 

  • QIASeq DIRECT 

02         ANALYZE

Using a straightforward credit system, you will get access to the cloud service that performs all steps necessary, starting from input validation, followed by quality assessment of the raw sequencing data, an alignment mapping of the data against the reference genome, a genome assembly, variant identification and mutation screening.

03         REPORT

A sample pdf report is available once the analysis is complete.

The report can be consulted in the EPISEQ® SARS-COV-2 application or downloaded if desired.