for SARS-CoV-2 variant identification starting from NGS data
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FAST AND INTUITIVE WORKFLOW
From your personal account you can directly upload your:
Illumina® (paired-end or single-end),
Thermo Fisher Ion Torrent® or
Oxford Nanopore Technologies® FASTQ files.
Use of targeted amplicon-based or targeted capture-based approaches are recommended.
For targeted amplicon-based approaches, mandatory use of ARTIC V3 primers.
Using a straightforward credit system, you will get access to the cloud service that performs all steps necessary, starting from input validation, followed by quality assessment of the raw sequencing data, a genome assembly, variant identification and mutation screening.
A sample pdf report is available once the analysis is complete.
The report can be consulted in the EPISEQ® SARS-COV-2 application or downloaded if desired.