QUALITY CONTROL (QC) SUMMARY REPORT
Quality control parameters are calculated per sample for the different steps in the pipeline. This allows perfect control over the quality of the data and the analysis results.
DECISION HELPING TOOL
Each sample is compared against all samples in the same upload and against the historical database of your previous uploads. The number of probably and possibly (un)related samples in the upload and in the population is shown in a color coded diagram.
Probably unrelated Possibly related Probably related
A phylogenetic analysis based on the wgMLST profiles provides insight in the relationships of the strains. A historical database with your previous uploads is built over time and can be used to compare new uploads to (only available with subscription).
QUALITY CONTROL REPORT PER SAMPLE
From the general QC summary report, an even more detailed report can be generated per single sample.
TYPING RESULTS PER SAMPLE
Whole genome sequencing data is used for MLST and Spa* typing in order to compare it to traditional methods. (*Spa typing only available for S. aureus)
SAMPLE RESISTOME REPORT PER SAMPLE
Two types of markers are displayed: loci and single mutations.
VIRULENCE REPORT PER SAMPLE
Detected virulence factors are displayed together with their mechanisms of action.
DOWNLOADABLE PDF OVERVIEW REPORT
When your analysis is finished, you can download the information above in a handy overview document in PDF format - easy to share.